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Methods for muscomic and muscadet objects

Source: R/objects.R
muscadet-methods.Rd

Methods to facilitate access to data within the muscomic and muscadet objects.

  • Cells(): Get cell identifiers (addition of methods for muscomic and muscadet to SeuratObject::Cells()).

  • Features(): Get feature identifiers (addition of methods for muscomic and muscadet to SeuratObject::Features()).

  • coordFeatures(): Get coordinates of features data frames.

  • matCounts(): Get raw count matrices.

  • matLogRatio(): Get log R ratio matrices.

Usage

coordFeatures(x)

matCounts(x)

matLogRatio(x)

# S3 method for class 'muscomic'
Cells(x, ...)

# S3 method for class 'muscadet'
Cells(x, ...)

# S3 method for class 'muscomic'
Features(x, ...)

# S3 method for class 'muscadet'
Features(x, ...)

# S4 method for class 'muscomic'
coordFeatures(x)

# S4 method for class 'muscadet'
coordFeatures(x)

# S4 method for class 'muscomic'
matCounts(x)

# S4 method for class 'muscadet'
matCounts(x)

# S4 method for class 'muscomic'
matLogRatio(x)

# S4 method for class 'muscadet'
matLogRatio(x)

Arguments

x

A muscomic or muscadet object.

...

Other arguments (ignored).

Value

Cells:

  • if x is a muscomic object: A vector of cell names.

  • if x is a muscadet object: A list of vectors of cell names, one list element per omic.

Features:

  • if x is a muscomic object: A vector of feature names.

  • if x is a muscadet object: A list of vectors of feature names, one list element per omic.

coordFeatures:

  • if x is a muscomic object: A data frame of feature coordinates.

  • if x is a muscadet object: A list of data frames of feature coordinates, one list element per omic.

matCounts:

  • if x is a muscomic object: A dgCMatrix-class features x cells.

  • if x is a muscadet object: A list of dgCMatrix-class features x cells, one list element per omic.

matLogRatio:

  • if x is a muscomic object: A matrix features x cells.

  • if x is a muscadet object: A list of matrix features x cells, one list element per omic.

See also

muscomic-class muscadet-class

Examples

library("SeuratObject")
#> Loading required package: sp
#> 
#> Attaching package: ‘SeuratObject’
#> The following objects are masked from ‘package:base’:
#> 
#>     intersect, t
# Load example muscadet object
data(muscadet_obj)

Cells(muscadet_obj) # list of 2 cell names vectors for the 2 omics
#> $ATAC
#>   [1] "samplename_AACAAAGGTCATGCAA-1" "samplename_AACGGTAAGGATAAAC-1"
#>   [3] "samplename_AAGCATGAGGGACGCA-1" "samplename_AAGCTCCCAACCCTCC-1"
#>   [5] "samplename_AATGTCATCATGCAAC-1" "samplename_AATTAGCGTAAAGCGG-1"
#>   [7] "samplename_ACACGGACAGCTCATA-1" "samplename_ACCAATATCCTCATGC-1"
#>   [9] "samplename_ACCTAAATCCAGCACA-1" "samplename_ACTATGTCAGTAGGTG-1"
#>  [11] "samplename_ACTTACAAGTAAGGGC-1" "samplename_AGAAACTAGGTCAAAG-1"
#>  [13] "samplename_AGAAGGTGTAGTAAGA-1" "samplename_AGACCCGGTAACCACA-1"
#>  [15] "samplename_AGCATCCCACCTCACC-1" "samplename_AGCTTAATCGCAAACT-1"
#>  [17] "samplename_AGGATATAGTTAGTGC-1" "samplename_AGTTACATCCGGTTAG-1"
#>  [19] "samplename_ATATGTCCACCTCACC-1" "samplename_ATGACCAGTCACCAAA-1"
#>  [21] "samplename_ATGACTCAGGGCCACT-1" "samplename_ATGGTTATCCAAATCA-1"
#>  [23] "samplename_ATGTTGTCATTGTGCA-1" "samplename_ATGTTTGAGCTTAGTA-1"
#>  [25] "samplename_ATTTGCGCAATACTGT-1" "samplename_CAACTAGGTGTTTGAG-1"
#>  [27] "samplename_CAGATTCAGCATGTCG-1" "samplename_CAGCATGTCGGTTCCT-1"
#>  [29] "samplename_CATGCAAGTTGAGCCG-1" "samplename_CATTTGTTCAATGACC-1"
#>  [31] "samplename_CCAGTTTGTAATCACG-1" "samplename_CCCTCATAGGACAATG-1"
#>  [33] "samplename_CCGCTAAAGGCATGTT-1" "samplename_CCGTTGCGTGTGTCCC-1"
#>  [35] "samplename_CCTGGATCATTCCTCG-1" "samplename_CCTTCAATCCGCCAAA-1"
#>  [37] "samplename_CGCCTCATCGATTATG-1" "samplename_CGCTACTTCCCTCAGT-1"
#>  [39] "samplename_CGCTATGAGTGACCTG-1" "samplename_CGGATAAAGGCATTGT-1"
#>  [41] "samplename_CGGATTAGTCATGAGC-1" "samplename_CGGTGAGAGCTTGCTC-1"
#>  [43] "samplename_CGGTTTCTCAATTACG-1" "samplename_CGTAATGGTCACCTAT-1"
#>  [45] "samplename_CGTGCACAGGTAGCTT-1" "samplename_CGTGTGTCAAGGATTA-1"
#>  [47] "samplename_CTAGCTTGTTAATGCG-1" "samplename_CTAGTGAGTTAACGAT-1"
#>  [49] "samplename_CTATGTTTCTTGGATA-1" "samplename_CTCACACTCCCATAAA-1"
#>  [51] "samplename_CTCACTCAGCGGATAA-1" "samplename_CTCCGGACAATGCGCT-1"
#>  [53] "samplename_CTTCAAGCACTAGGTC-1" "samplename_GAAAGGCTCTAAGTGC-1"
#>  [55] "samplename_GAAGGAACACTCGCTC-1" "samplename_GAGCAAGGTGGTTCTT-1"
#>  [57] "samplename_GAGGTACAGCAAGGTA-1" "samplename_GAGGTTAAGGACCTTG-1"
#>  [59] "samplename_GATCAGGCAACTAGCC-1" "samplename_GATTGCGTCCTCACTA-1"
#>  [61] "samplename_GCAAGTGCAGGACCTT-1" "samplename_GCAATCTAGCTCCTTA-1"
#>  [63] "samplename_GCAGGAAGTGCATCGG-1" "samplename_GCAGGTTGTTATTGCC-1"
#>  [65] "samplename_GCCAGGTTCACAGGAA-1" "samplename_GCTGCAATCCGTAAAC-1"
#>  [67] "samplename_GCTGTAAGTTAAGGCC-1" "samplename_GCTTAGTAGTAATCCA-1"
#>  [69] "samplename_GGAGGTTAGGCTAATC-1" "samplename_GGCGGTAAGAACAAGT-1"
#>  [71] "samplename_GGGCTAACAGCCAGAA-1" "samplename_GGTACTAGTGTGAGGA-1"
#>  [73] "samplename_GGTCAAGCATGAGCAG-1" "samplename_GGTGAGCCAGCTCATA-1"
#>  [75] "samplename_GGTTAATGTATTCGTC-1" "samplename_GGTTAGCGTCAGGCAT-1"
#>  [77] "samplename_GGTTATGGTGTTTCAC-1" "samplename_GGTTGCTCAGGTTATT-1"
#>  [79] "samplename_GTACTTCGTTGTGACA-1" "samplename_GTAGCGCTCCTTTACG-1"
#>  [81] "samplename_GTCTAGCCAGGATGGC-1" "samplename_GTGTGCGGTTACCGGG-1"
#>  [83] "samplename_GTTAAGTGTAGGTGTC-1" "samplename_GTTAGACTCACACAGT-1"
#>  [85] "samplename_GTTGCCCGTTAGGATT-1" "samplename_GTTTAACCACCTGTAA-1"
#>  [87] "samplename_TAATGCATCGATCAGT-1" "samplename_TACATCAAGGCTAATC-1"
#>  [89] "samplename_TACGGTTAGTTTGTCT-1" "samplename_TATATCCTCCGCACAA-1"
#>  [91] "samplename_TATTAGCCAGGCTAAG-1" "samplename_TATTGACCAGCGCTTG-1"
#>  [93] "samplename_TCAGCCTTCACCTGCT-1" "samplename_TCAGCGATCTTTAAGG-1"
#>  [95] "samplename_TCCCTGGTCCCGCAAA-1" "samplename_TCCTGGTTCGAGGAAC-1"
#>  [97] "samplename_TCGATTAAGCCGCTAA-1" "samplename_TCTAACTTCTTTGACT-1"
#>  [99] "samplename_TCTTAGCGTCCAAGAC-1" "samplename_TCTTCAAGTAATGGCC-1"
#> [101] "samplename_TGAGAACCAAAGGTAC-1" "samplename_TGAGAACCAAGGTGCA-1"
#> [103] "samplename_TGCTCCGTCAAACCGT-1" "samplename_TGGTTCCTCTTGCTAT-1"
#> [105] "samplename_TGTGGCCAGGGACTAA-1" "samplename_TGTGGCCAGTAACCAC-1"
#> [107] "samplename_TGTTATGAGTAGCGCC-1" "samplename_TGTTGGCCAGGCTAAG-1"
#> [109] "samplename_TTAGCTGCATAAGCAA-1" "samplename_TTGCAGCCAGAGGGAG-1"
#> [111] "samplename_TTTAACCTCGGTTCCT-1" "samplename_TTTCTTGCAGAGGCTA-1"
#> 
#> $RNA
#>   [1] "samplename_AAAGGTTAGTCACCAG-1" "samplename_AACAAAGGTCATGCAA-1"
#>   [3] "samplename_AACGGTAAGGATAAAC-1" "samplename_AAGAACAGTTTGAGGC-1"
#>   [5] "samplename_AAGCATGAGGGACGCA-1" "samplename_AAGCTCCCAACCCTCC-1"
#>   [7] "samplename_AATAGAGGTTTGCGAA-1" "samplename_AATGTCATCATGCAAC-1"
#>   [9] "samplename_AATTAGCGTAAAGCGG-1" "samplename_AATTGCTCATCGCTTT-1"
#>  [11] "samplename_ACACGGACAGCTCATA-1" "samplename_ACCTAAATCCAGCACA-1"
#>  [13] "samplename_ACTATGTCAGTAGGTG-1" "samplename_ACTATGTCATTAAACC-1"
#>  [15] "samplename_ACTCACCTCATTACAG-1" "samplename_ACTTACAAGTAAGGGC-1"
#>  [17] "samplename_AGAAACTAGGTCAAAG-1" "samplename_AGACCCGGTAACCACA-1"
#>  [19] "samplename_AGCATCCCACCTCACC-1" "samplename_AGCTTAATCGCAAACT-1"
#>  [21] "samplename_AGGATATAGTTAGTGC-1" "samplename_ATACCGGTCTTAGGGT-1"
#>  [23] "samplename_ATATGTCCACCTCACC-1" "samplename_ATGACCAGTCACCAAA-1"
#>  [25] "samplename_ATGACTCAGGGCCACT-1" "samplename_ATGCAGGCAACTAGCC-1"
#>  [27] "samplename_ATGCGATTCAGCAAAG-1" "samplename_ATGGCTTAGTTGTCTT-1"
#>  [29] "samplename_ATGGTTATCCAAATCA-1" "samplename_ATGTTGTCATTGTGCA-1"
#>  [31] "samplename_ATTGCACAGGACCTGC-1" "samplename_CAACTAGGTGTTTGAG-1"
#>  [33] "samplename_CAAGAACCACCTACTT-1" "samplename_CAAGAACCATGAAGTA-1"
#>  [35] "samplename_CAGATTCAGCATGTCG-1" "samplename_CAGCATGTCGGTTCCT-1"
#>  [37] "samplename_CATGCAAGTTGAGCCG-1" "samplename_CATTTGTTCAATGACC-1"
#>  [39] "samplename_CCAGTTTGTAATCACG-1" "samplename_CCATATTTCAAGCGCC-1"
#>  [41] "samplename_CCGCTAAAGGCATGTT-1" "samplename_CCGTTGCGTGTGTCCC-1"
#>  [43] "samplename_CCTGGATCATTCCTCG-1" "samplename_CCTTCAATCCGCCAAA-1"
#>  [45] "samplename_CGAAGTAAGGGCTAAA-1" "samplename_CGCACACAGTTCCTGC-1"
#>  [47] "samplename_CGCCTCATCGATTATG-1" "samplename_CGCTACTTCCCTCAGT-1"
#>  [49] "samplename_CGGATAAAGGCATTGT-1" "samplename_CGGATTAGTCATGAGC-1"
#>  [51] "samplename_CGGTGAGAGCTTGCTC-1" "samplename_CGTAATGGTCACCTAT-1"
#>  [53] "samplename_CGTGCACAGGTAGCTT-1" "samplename_CGTGTGTCACTCGCTC-1"
#>  [55] "samplename_CTACTAAAGGGATTAG-1" "samplename_CTAGCTTGTTAATGCG-1"
#>  [57] "samplename_CTAGTGAGTTAACGAT-1" "samplename_CTATGTTTCTTGGATA-1"
#>  [59] "samplename_CTCACACTCCCATAAA-1" "samplename_CTCACTCAGGCTATGT-1"
#>  [61] "samplename_CTCATTAGTGGATTGC-1" "samplename_CTCCGGACAATGCGCT-1"
#>  [63] "samplename_GAAAGGCTCTAAGTGC-1" "samplename_GAAGGAACACTCGCTC-1"
#>  [65] "samplename_GAGATAAGTTTCCTCC-1" "samplename_GAGGTTAAGGACCTTG-1"
#>  [67] "samplename_GATCAGGCAACTAGCC-1" "samplename_GATTGCGTCCTCACTA-1"
#>  [69] "samplename_GCAAGTGCAGGACCTT-1" "samplename_GCAATCTAGCTCCTTA-1"
#>  [71] "samplename_GCCAGGAAGATGGACA-1" "samplename_GCCAGGTTCACAGGAA-1"
#>  [73] "samplename_GCTGTAAGTTAAGGCC-1" "samplename_GCTGTGATCATCCTCA-1"
#>  [75] "samplename_GCTTAGTAGTAATCCA-1" "samplename_GCTTGACCAGCCAGTT-1"
#>  [77] "samplename_GGAGGTTAGGCTAATC-1" "samplename_GGGCTAACAGCCAGAA-1"
#>  [79] "samplename_GGTACAAAGCAACAAG-1" "samplename_GGTACTAGTGTGAGGA-1"
#>  [81] "samplename_GGTCAAGCATGAGCAG-1" "samplename_GGTGAGCCAGCTCATA-1"
#>  [83] "samplename_GGTTAATGTATTCGTC-1" "samplename_GGTTATGGTGTTTCAC-1"
#>  [85] "samplename_GTACTTCGTTGTGACA-1" "samplename_GTAGCGCTCCTTTACG-1"
#>  [87] "samplename_GTCTAGCCAGGATGGC-1" "samplename_GTCTCACTCTTTAGGA-1"
#>  [89] "samplename_GTGTGCGGTTACCGGG-1" "samplename_GTTAAGTGTAGGTGTC-1"
#>  [91] "samplename_GTTAGACTCACACAGT-1" "samplename_GTTCACCTCATGCGTG-1"
#>  [93] "samplename_GTTGTGAGTTAAGCTG-1" "samplename_TAAAGCCTCTAAGGTC-1"
#>  [95] "samplename_TAATGCATCGATCAGT-1" "samplename_TACATCAAGGCTAATC-1"
#>  [97] "samplename_TACGGTTAGTTTGTCT-1" "samplename_TACTAAGTCCGCATGA-1"
#>  [99] "samplename_TAGTTGTCAAGCCAGA-1" "samplename_TATATCCTCCGCACAA-1"
#> [101] "samplename_TATTACCTCCTGAATA-1" "samplename_TCAGCCTTCACCTGCT-1"
#> [103] "samplename_TCAGCGATCTTTAAGG-1" "samplename_TCCCTGGTCCCGCAAA-1"
#> [105] "samplename_TCCTGGTTCGAGGAAC-1" "samplename_TCGATTAAGCCGCTAA-1"
#> [107] "samplename_TCTAACTTCTTTGACT-1" "samplename_TCTTAGCGTCCAAGAC-1"
#> [109] "samplename_TGAGAACCAAAGGTAC-1" "samplename_TGAGAACCAAGGTGCA-1"
#> [111] "samplename_TGCGCGAGTTGTTGGA-1" "samplename_TGGTTCCTCTTGCTAT-1"
#> [113] "samplename_TGTAACTCAAATTGCT-1" "samplename_TGTGGCCAGGGACTAA-1"
#> [115] "samplename_TGTGGCCAGTAACCAC-1" "samplename_TGTTGGCCAGGCTAAG-1"
#> [117] "samplename_TTAGCTGCATAAGCAA-1" "samplename_TTTAACCTCCTTGCGT-1"
#> [119] "samplename_TTTAACCTCGGTTCCT-1"
#> 
Cells(muscadet_obj)$ATAC # cell names vector from the omic ATAC
#>   [1] "samplename_AACAAAGGTCATGCAA-1" "samplename_AACGGTAAGGATAAAC-1"
#>   [3] "samplename_AAGCATGAGGGACGCA-1" "samplename_AAGCTCCCAACCCTCC-1"
#>   [5] "samplename_AATGTCATCATGCAAC-1" "samplename_AATTAGCGTAAAGCGG-1"
#>   [7] "samplename_ACACGGACAGCTCATA-1" "samplename_ACCAATATCCTCATGC-1"
#>   [9] "samplename_ACCTAAATCCAGCACA-1" "samplename_ACTATGTCAGTAGGTG-1"
#>  [11] "samplename_ACTTACAAGTAAGGGC-1" "samplename_AGAAACTAGGTCAAAG-1"
#>  [13] "samplename_AGAAGGTGTAGTAAGA-1" "samplename_AGACCCGGTAACCACA-1"
#>  [15] "samplename_AGCATCCCACCTCACC-1" "samplename_AGCTTAATCGCAAACT-1"
#>  [17] "samplename_AGGATATAGTTAGTGC-1" "samplename_AGTTACATCCGGTTAG-1"
#>  [19] "samplename_ATATGTCCACCTCACC-1" "samplename_ATGACCAGTCACCAAA-1"
#>  [21] "samplename_ATGACTCAGGGCCACT-1" "samplename_ATGGTTATCCAAATCA-1"
#>  [23] "samplename_ATGTTGTCATTGTGCA-1" "samplename_ATGTTTGAGCTTAGTA-1"
#>  [25] "samplename_ATTTGCGCAATACTGT-1" "samplename_CAACTAGGTGTTTGAG-1"
#>  [27] "samplename_CAGATTCAGCATGTCG-1" "samplename_CAGCATGTCGGTTCCT-1"
#>  [29] "samplename_CATGCAAGTTGAGCCG-1" "samplename_CATTTGTTCAATGACC-1"
#>  [31] "samplename_CCAGTTTGTAATCACG-1" "samplename_CCCTCATAGGACAATG-1"
#>  [33] "samplename_CCGCTAAAGGCATGTT-1" "samplename_CCGTTGCGTGTGTCCC-1"
#>  [35] "samplename_CCTGGATCATTCCTCG-1" "samplename_CCTTCAATCCGCCAAA-1"
#>  [37] "samplename_CGCCTCATCGATTATG-1" "samplename_CGCTACTTCCCTCAGT-1"
#>  [39] "samplename_CGCTATGAGTGACCTG-1" "samplename_CGGATAAAGGCATTGT-1"
#>  [41] "samplename_CGGATTAGTCATGAGC-1" "samplename_CGGTGAGAGCTTGCTC-1"
#>  [43] "samplename_CGGTTTCTCAATTACG-1" "samplename_CGTAATGGTCACCTAT-1"
#>  [45] "samplename_CGTGCACAGGTAGCTT-1" "samplename_CGTGTGTCAAGGATTA-1"
#>  [47] "samplename_CTAGCTTGTTAATGCG-1" "samplename_CTAGTGAGTTAACGAT-1"
#>  [49] "samplename_CTATGTTTCTTGGATA-1" "samplename_CTCACACTCCCATAAA-1"
#>  [51] "samplename_CTCACTCAGCGGATAA-1" "samplename_CTCCGGACAATGCGCT-1"
#>  [53] "samplename_CTTCAAGCACTAGGTC-1" "samplename_GAAAGGCTCTAAGTGC-1"
#>  [55] "samplename_GAAGGAACACTCGCTC-1" "samplename_GAGCAAGGTGGTTCTT-1"
#>  [57] "samplename_GAGGTACAGCAAGGTA-1" "samplename_GAGGTTAAGGACCTTG-1"
#>  [59] "samplename_GATCAGGCAACTAGCC-1" "samplename_GATTGCGTCCTCACTA-1"
#>  [61] "samplename_GCAAGTGCAGGACCTT-1" "samplename_GCAATCTAGCTCCTTA-1"
#>  [63] "samplename_GCAGGAAGTGCATCGG-1" "samplename_GCAGGTTGTTATTGCC-1"
#>  [65] "samplename_GCCAGGTTCACAGGAA-1" "samplename_GCTGCAATCCGTAAAC-1"
#>  [67] "samplename_GCTGTAAGTTAAGGCC-1" "samplename_GCTTAGTAGTAATCCA-1"
#>  [69] "samplename_GGAGGTTAGGCTAATC-1" "samplename_GGCGGTAAGAACAAGT-1"
#>  [71] "samplename_GGGCTAACAGCCAGAA-1" "samplename_GGTACTAGTGTGAGGA-1"
#>  [73] "samplename_GGTCAAGCATGAGCAG-1" "samplename_GGTGAGCCAGCTCATA-1"
#>  [75] "samplename_GGTTAATGTATTCGTC-1" "samplename_GGTTAGCGTCAGGCAT-1"
#>  [77] "samplename_GGTTATGGTGTTTCAC-1" "samplename_GGTTGCTCAGGTTATT-1"
#>  [79] "samplename_GTACTTCGTTGTGACA-1" "samplename_GTAGCGCTCCTTTACG-1"
#>  [81] "samplename_GTCTAGCCAGGATGGC-1" "samplename_GTGTGCGGTTACCGGG-1"
#>  [83] "samplename_GTTAAGTGTAGGTGTC-1" "samplename_GTTAGACTCACACAGT-1"
#>  [85] "samplename_GTTGCCCGTTAGGATT-1" "samplename_GTTTAACCACCTGTAA-1"
#>  [87] "samplename_TAATGCATCGATCAGT-1" "samplename_TACATCAAGGCTAATC-1"
#>  [89] "samplename_TACGGTTAGTTTGTCT-1" "samplename_TATATCCTCCGCACAA-1"
#>  [91] "samplename_TATTAGCCAGGCTAAG-1" "samplename_TATTGACCAGCGCTTG-1"
#>  [93] "samplename_TCAGCCTTCACCTGCT-1" "samplename_TCAGCGATCTTTAAGG-1"
#>  [95] "samplename_TCCCTGGTCCCGCAAA-1" "samplename_TCCTGGTTCGAGGAAC-1"
#>  [97] "samplename_TCGATTAAGCCGCTAA-1" "samplename_TCTAACTTCTTTGACT-1"
#>  [99] "samplename_TCTTAGCGTCCAAGAC-1" "samplename_TCTTCAAGTAATGGCC-1"
#> [101] "samplename_TGAGAACCAAAGGTAC-1" "samplename_TGAGAACCAAGGTGCA-1"
#> [103] "samplename_TGCTCCGTCAAACCGT-1" "samplename_TGGTTCCTCTTGCTAT-1"
#> [105] "samplename_TGTGGCCAGGGACTAA-1" "samplename_TGTGGCCAGTAACCAC-1"
#> [107] "samplename_TGTTATGAGTAGCGCC-1" "samplename_TGTTGGCCAGGCTAAG-1"
#> [109] "samplename_TTAGCTGCATAAGCAA-1" "samplename_TTGCAGCCAGAGGGAG-1"
#> [111] "samplename_TTTAACCTCGGTTCCT-1" "samplename_TTTCTTGCAGAGGCTA-1"
Cells(muscadet_obj$ATAC) # cell names vector from the ATAC muscomic object
#>   [1] "samplename_AACAAAGGTCATGCAA-1" "samplename_AACGGTAAGGATAAAC-1"
#>   [3] "samplename_AAGCATGAGGGACGCA-1" "samplename_AAGCTCCCAACCCTCC-1"
#>   [5] "samplename_AATGTCATCATGCAAC-1" "samplename_AATTAGCGTAAAGCGG-1"
#>   [7] "samplename_ACACGGACAGCTCATA-1" "samplename_ACCAATATCCTCATGC-1"
#>   [9] "samplename_ACCTAAATCCAGCACA-1" "samplename_ACTATGTCAGTAGGTG-1"
#>  [11] "samplename_ACTTACAAGTAAGGGC-1" "samplename_AGAAACTAGGTCAAAG-1"
#>  [13] "samplename_AGAAGGTGTAGTAAGA-1" "samplename_AGACCCGGTAACCACA-1"
#>  [15] "samplename_AGCATCCCACCTCACC-1" "samplename_AGCTTAATCGCAAACT-1"
#>  [17] "samplename_AGGATATAGTTAGTGC-1" "samplename_AGTTACATCCGGTTAG-1"
#>  [19] "samplename_ATATGTCCACCTCACC-1" "samplename_ATGACCAGTCACCAAA-1"
#>  [21] "samplename_ATGACTCAGGGCCACT-1" "samplename_ATGGTTATCCAAATCA-1"
#>  [23] "samplename_ATGTTGTCATTGTGCA-1" "samplename_ATGTTTGAGCTTAGTA-1"
#>  [25] "samplename_ATTTGCGCAATACTGT-1" "samplename_CAACTAGGTGTTTGAG-1"
#>  [27] "samplename_CAGATTCAGCATGTCG-1" "samplename_CAGCATGTCGGTTCCT-1"
#>  [29] "samplename_CATGCAAGTTGAGCCG-1" "samplename_CATTTGTTCAATGACC-1"
#>  [31] "samplename_CCAGTTTGTAATCACG-1" "samplename_CCCTCATAGGACAATG-1"
#>  [33] "samplename_CCGCTAAAGGCATGTT-1" "samplename_CCGTTGCGTGTGTCCC-1"
#>  [35] "samplename_CCTGGATCATTCCTCG-1" "samplename_CCTTCAATCCGCCAAA-1"
#>  [37] "samplename_CGCCTCATCGATTATG-1" "samplename_CGCTACTTCCCTCAGT-1"
#>  [39] "samplename_CGCTATGAGTGACCTG-1" "samplename_CGGATAAAGGCATTGT-1"
#>  [41] "samplename_CGGATTAGTCATGAGC-1" "samplename_CGGTGAGAGCTTGCTC-1"
#>  [43] "samplename_CGGTTTCTCAATTACG-1" "samplename_CGTAATGGTCACCTAT-1"
#>  [45] "samplename_CGTGCACAGGTAGCTT-1" "samplename_CGTGTGTCAAGGATTA-1"
#>  [47] "samplename_CTAGCTTGTTAATGCG-1" "samplename_CTAGTGAGTTAACGAT-1"
#>  [49] "samplename_CTATGTTTCTTGGATA-1" "samplename_CTCACACTCCCATAAA-1"
#>  [51] "samplename_CTCACTCAGCGGATAA-1" "samplename_CTCCGGACAATGCGCT-1"
#>  [53] "samplename_CTTCAAGCACTAGGTC-1" "samplename_GAAAGGCTCTAAGTGC-1"
#>  [55] "samplename_GAAGGAACACTCGCTC-1" "samplename_GAGCAAGGTGGTTCTT-1"
#>  [57] "samplename_GAGGTACAGCAAGGTA-1" "samplename_GAGGTTAAGGACCTTG-1"
#>  [59] "samplename_GATCAGGCAACTAGCC-1" "samplename_GATTGCGTCCTCACTA-1"
#>  [61] "samplename_GCAAGTGCAGGACCTT-1" "samplename_GCAATCTAGCTCCTTA-1"
#>  [63] "samplename_GCAGGAAGTGCATCGG-1" "samplename_GCAGGTTGTTATTGCC-1"
#>  [65] "samplename_GCCAGGTTCACAGGAA-1" "samplename_GCTGCAATCCGTAAAC-1"
#>  [67] "samplename_GCTGTAAGTTAAGGCC-1" "samplename_GCTTAGTAGTAATCCA-1"
#>  [69] "samplename_GGAGGTTAGGCTAATC-1" "samplename_GGCGGTAAGAACAAGT-1"
#>  [71] "samplename_GGGCTAACAGCCAGAA-1" "samplename_GGTACTAGTGTGAGGA-1"
#>  [73] "samplename_GGTCAAGCATGAGCAG-1" "samplename_GGTGAGCCAGCTCATA-1"
#>  [75] "samplename_GGTTAATGTATTCGTC-1" "samplename_GGTTAGCGTCAGGCAT-1"
#>  [77] "samplename_GGTTATGGTGTTTCAC-1" "samplename_GGTTGCTCAGGTTATT-1"
#>  [79] "samplename_GTACTTCGTTGTGACA-1" "samplename_GTAGCGCTCCTTTACG-1"
#>  [81] "samplename_GTCTAGCCAGGATGGC-1" "samplename_GTGTGCGGTTACCGGG-1"
#>  [83] "samplename_GTTAAGTGTAGGTGTC-1" "samplename_GTTAGACTCACACAGT-1"
#>  [85] "samplename_GTTGCCCGTTAGGATT-1" "samplename_GTTTAACCACCTGTAA-1"
#>  [87] "samplename_TAATGCATCGATCAGT-1" "samplename_TACATCAAGGCTAATC-1"
#>  [89] "samplename_TACGGTTAGTTTGTCT-1" "samplename_TATATCCTCCGCACAA-1"
#>  [91] "samplename_TATTAGCCAGGCTAAG-1" "samplename_TATTGACCAGCGCTTG-1"
#>  [93] "samplename_TCAGCCTTCACCTGCT-1" "samplename_TCAGCGATCTTTAAGG-1"
#>  [95] "samplename_TCCCTGGTCCCGCAAA-1" "samplename_TCCTGGTTCGAGGAAC-1"
#>  [97] "samplename_TCGATTAAGCCGCTAA-1" "samplename_TCTAACTTCTTTGACT-1"
#>  [99] "samplename_TCTTAGCGTCCAAGAC-1" "samplename_TCTTCAAGTAATGGCC-1"
#> [101] "samplename_TGAGAACCAAAGGTAC-1" "samplename_TGAGAACCAAGGTGCA-1"
#> [103] "samplename_TGCTCCGTCAAACCGT-1" "samplename_TGGTTCCTCTTGCTAT-1"
#> [105] "samplename_TGTGGCCAGGGACTAA-1" "samplename_TGTGGCCAGTAACCAC-1"
#> [107] "samplename_TGTTATGAGTAGCGCC-1" "samplename_TGTTGGCCAGGCTAAG-1"
#> [109] "samplename_TTAGCTGCATAAGCAA-1" "samplename_TTGCAGCCAGAGGGAG-1"
#> [111] "samplename_TTTAACCTCGGTTCCT-1" "samplename_TTTCTTGCAGAGGCTA-1"