The muscadet class

A muscadet object encapsulates data from different single-cell omics as muscomic objects as well as downstream analysis results after clustering and CNA calling.

Slots

omics

List of muscomic objects, one per single-cell omic (list).

bulk.data

List of objects containing data from paired bulk sequencing (list).

clustering

List of objects containing data associated with the clustering of cells based on coverage log R ratio values (list).

cnacalling

List of objects containing data associated with the calling of copy number alterations (CNAs) (list).

genome

Reference genome name among: "hg38", "hg19" and "mm10" (character).

See also

Functions related to muscadet objects:

• CreateMuscadetObject() (create muscadet objects)

• muscadet-access (simplified access and assignment methods)

• .DollarNames.muscadet (autocompletion for $)

• show,muscadet-method (show method)