The muscomic class

A muscomic object encapsulates coverage and allelic data from one single-cell omic dataset used as primary input for muscadet analysis.

Slots

type

Type of single-cell omic. Either ATAC or RNA currently supported (character).

label.omic

Label to display for the single-cell omic (character).

coverage

Coverage data on features (list).

allelic

Allelic data at variant positions (common SNPs or individual-specific heterozygous positions) (list).

See also

Functions related to muscomic objects:

• CreateMuscomicObject() (create muscomic objects)

• muscadet-access (simplified access and assignment methods)

• .DollarNames.muscadet (autocompletion for $)

• show,muscomic-method (show method)